- Emotion Coming
- Endlessly prod. by John Cornfield, Paul Reeve & Rich Costey
- Endlessly (Recorded Live at the Columbiahalle, Berlin 2003) prod. by John Cornfield, Paul Reeve & Rich Costey
- Escape prod. by John Leckie
- Escape (Live) prod. by Chris Wolstenholme, Dominic Howard, Matt Bellamy & Tom Kirk
- Escape (Muse EP Version)
- Eternally Missed prod. by Rich Costey
- Euphoria
- Euphoria (Solomun Remix) [Edit] (Ft. Solomun)
- Euphoria (Solomun Remix) [Extended] (Ft. Solomun)
- Euphoria (Welsh Translation) (Ft. Chris Wolstenholme, Dominic Howard & Matt Bellamy)
- Execution Commentary prod. by Chris Wolstenholme, Dominic Howard & Matt Bellamy
- Exogenesis: Symphony, Pt. 1 (Overture) prod. by Chris Wolstenholme, Dominic Howard & Matt Bellamy
- Exogenesis: Symphony, Pt. 2 (Cross-pollination) prod. by Chris Wolstenholme, Dominic Howard & Matt Bellamy
- Exogenesis: Symphony, Pt. 3 (Redemption) prod. by Chris Wolstenholme, Dominic Howard & Matt Bellamy
- Exo-Politics prod. by Chris Wolstenholme, Dominic Howard, Matt Bellamy & Rich Costey
- Explorers prod. by Chris Wolstenholme, Dominic Howard & Matt Bellamy
- Explorers (Rome Olympic Stadium)
- Falling Away with You prod. by Rich Costey